digest - Create Compact Hash Digests of R Objects

Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.

Last updated 1 months ago

hash-digest

19.77 score 114 stars 6.8k dependents 11k scripts 1.1M downloads

rticles - Article Formats for R Markdown

A suite of custom R Markdown formats and templates for authoring journal articles and conference submissions.

Last updated 21 days ago

articlejournalpaperrmarkdown

11.51 score 1.5k stars 2 dependents 188 scripts 4.0k downloads

git2rdata - Store and Retrieve Data.frames in a Git Repository

The git2rdata package is an R package for writing and reading dataframes as plain text files. A metadata file stores important information. 1) Storing metadata allows to maintain the classes of variables. By default, git2rdata optimizes the data for file storage. The optimization is most effective on data containing factors. The optimization makes the data less human readable. The user can turn this off when they prefer a human readable format over smaller files. Details on the implementation are available in vignette("plain_text", package = "git2rdata"). 2) Storing metadata also allows smaller row based diffs between two consecutive commits. This is a useful feature when storing data as plain text files under version control. Details on this part of the implementation are available in vignette("version_control", package = "git2rdata"). Although we envisioned git2rdata with a git workflow in mind, you can use it in combination with other version control systems like subversion or mercurial. 3) git2rdata is a useful tool in a reproducible and traceable workflow. vignette("workflow", package = "git2rdata") gives a toy example. 4) vignette("efficiency", package = "git2rdata") provides some insight into the efficiency of file storage, git repository size and speed for writing and reading.

Last updated 26 days ago

reproducible-researchversion-control

10.03 score 99 stars 4 dependents 216 scripts 639 downloads

git2rdata - Store and Retrieve Data.frames in a Git Repository

The git2rdata package is an R package for writing and reading dataframes as plain text files. A metadata file stores important information. 1) Storing metadata allows to maintain the classes of variables. By default, git2rdata optimizes the data for file storage. The optimization is most effective on data containing factors. The optimization makes the data less human readable. The user can turn this off when they prefer a human readable format over smaller files. Details on the implementation are available in vignette("plain_text", package = "git2rdata"). 2) Storing metadata also allows smaller row based diffs between two consecutive commits. This is a useful feature when storing data as plain text files under version control. Details on this part of the implementation are available in vignette("version_control", package = "git2rdata"). Although we envisioned git2rdata with a git workflow in mind, you can use it in combination with other version control systems like subversion or mercurial. 3) git2rdata is a useful tool in a reproducible and traceable workflow. vignette("workflow", package = "git2rdata") gives a toy example. 4) vignette("efficiency", package = "git2rdata") provides some insight into the efficiency of file storage, git repository size and speed for writing and reading.

Last updated 26 days ago

reproducible-researchversion-control

9.92 score 99 stars 3 dependents 222 scripts 336 downloads

checklist - A Thorough and Strict Set of Checks for R Packages and Source Code

An opinionated set of rules for R packages and R source code projects.

Last updated 2 days ago

checklistcontinuous-integrationcontinuous-testingquality-assurance

7.24 score 19 stars 2 dependents 21 scripts

checklist - A Thorough and Strict Set of Checks for R Packages and Source Code

An opinionated set of rules for R packages and R source code projects.

Last updated 2 days ago

checklistcontinuous-integrationcontinuous-testingquality-assurance

7.24 score 19 stars 2 dependents 21 scripts

qrcode - Generate QRcodes with R

Create static QR codes in R. The content of the QR code is exactly what the user defines. We don't add a redirect URL, making it impossible for us to track the usage of the QR code. This allows to generate fast, free to use and privacy friendly QR codes.

Last updated 5 months ago

qrcodeqrcode-generatorr-project

7.19 score 44 stars 6 dependents 388 scripts 1.0k downloads

INBOtheme - Themes for ggplot2

Several themes for the ggplot2 package. Among others themes complying with the style guide for the Research Institute for Nature and Forest (INBO) and Elsevier journals.

Last updated 2 years ago

ggplot2ggplot2-themes

5.20 score 3 stars 356 scripts

INBOtheme - Themes for ggplot2

Several themes for the ggplot2 package. Among others themes complying with the style guide for the Research Institute for Nature and Forest (INBO) and Elsevier journals.

Last updated 2 years ago

ggplot2ggplot2-themes

5.20 score 3 stars 356 scripts

effectclass - Classification and Visualisation of Effects

Classify effects by comparing the confidence intervals with thresholds.

Last updated 9 months ago

effect-sizefan-chart

4.82 score 6 stars 37 scripts

effectclass - Classification and Visualisation of Effects

Classify effects by comparing the confidence intervals with thresholds.

Last updated 9 months ago

effect-sizefan-chart

4.82 score 6 stars 37 scripts

INBOmd - Markdown Templates for INBO

Several templates to generate reports, presentations and posters.

Last updated 1 years ago

bookdownrmarkdownxelatex

4.52 score 12 stars 11 scripts

INBOmd - Markdown Templates for INBO

Several templates to generate reports, presentations and posters.

Last updated 1 years ago

bookdownrmarkdownxelatex

4.52 score 12 stars 11 scripts

inlatools - Diagnostic Tools for INLA Models

Several functions which can be useful to choose sensible priors and diagnose the fitted model.

Last updated 5 months ago

bayesian-statisticsgplv3inlamixed-modelsmodel-checkingmodel-validation

4.41 score 4 stars 43 scripts

inlatools - Diagnostic Tools for INLA Models

Several functions which can be useful to choose sensible priors and diagnose the fitted model.

Last updated 5 months ago

bayesian-statisticsgplv3inlamixed-modelsmodel-checkingmodel-validation

4.41 score 4 stars 43 scripts

n2kanalysis - Generic Functions to Analyse Data from the 'Natura 2000' Monitoring

All generic functions and classes for the analysis for the 'Natura 2000' monitoring. The classes contain all required data and definitions to fit the model without the need to access other sources. Potentially they might need access to one or more parent objects. An aggregation object might for example need the result of an imputation object. The actual definition of the analysis, using these generic function and classes, is defined in dedictated analysis R packages for every monitoring scheme. For example 'abvanalysis' and 'watervogelanalysis'.

Last updated 20 days ago

analysismonitoringnatura2000

3.48 score 1 stars 7 scripts

multimput - Using Multiple Imputation to Address Missing Data

Accompanying package for the paper: Working with population totals in the presence of missing data comparing imputation methods in terms of bias and precision. Published in 2017 in the Journal of Ornithology volume 158 page 603–615 (<doi:10.1007/s10336-016-1404-9>).

Last updated 5 months ago

imputationimputation-model

3.32 score 1 stars 1 dependents 14 scripts

multimput - Using Multiple Imputation to Address Missing Data

Accompanying package for the paper: Working with population totals in the presence of missing data comparing imputation methods in terms of bias and precision. Published in 2017 in the Journal of Ornithology volume 158 page 603–615 (<doi:10.1007/s10336-016-1404-9>).

Last updated 5 months ago

imputationimputation-model

3.32 score 1 stars 1 dependents 14 scripts

grtsdb - Create a Sampling Frame Using GRTS

Create an SQLite database containing the sampling framework for different levels of resolution. Take a sample from this framework.

Last updated 3 years ago

grtssamplingsampling-methodssqlite

2.70 score 1 stars 9 scripts

grtsdb - Create a Sampling Frame Using GRTS

Create an SQLite database containing the sampling framework for different levels of resolution. Take a sample from this framework.

Last updated 3 years ago

grtssamplingsampling-methodssqlite

2.70 score 1 stars 9 scripts

n2khelper - Auxiliary Functions for the Analysis and Reporting of the Natura 2000 Monitoring

Auxiliary functions for analysing Natura 2000 monitoring data.

Last updated 3 years ago

natura2000

2.18 score 1 dependents 1 scripts

territoria - Clustering Observations from Breeding Birds into Territoria

Clusters individual observations based on breeding indication and distance between observations.

Last updated 2 years ago

birdbreedingclusterhome-rangeterritory

1.70 score 4 scripts

territoria - Clustering Observations from Breeding Birds into Territoria

Clusters individual observations based on breeding indication and distance between observations.

Last updated 2 years ago

birdbreedingclusterhome-rangeterritory

1.70 score 4 scripts

ladybird - Analysis of Ladybird Occurrence Data

Analysis of ladybird occurrence data from Belgium, the Netherlands and the UK since 1990.

Last updated 4 years ago

1.70 score 3 scripts

ladybird - Analysis of Ladybird Occurrence Data

Analysis of ladybird occurrence data from Belgium, the Netherlands and the UK since 1990.

Last updated 4 years ago

1.70 score 3 scripts

n2kupdate - Auxiliary Functions to Update the n2kresult Database

The functions are useful to store the results from https:// github.com/inbo/n2kanalysis into a PostgreSQL database created with https:// github.com/inbo/n2kresult.

Last updated 6 years ago

etlnatura2000

1.70 score 1 scripts

lipsum - Generate dummy text

Functions that generate dummy text. This is useful when developping a corporate identity for documents.

Last updated 6 years ago

lipsumtypography

1.36 score 23 scripts