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digest - Create Compact Hash Digests of R Objects

Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.

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hash-digest

19.76 score 121 stars 7.6k dependents 12k scripts 1.2M downloads

rticles - Article Formats for R Markdown

A suite of custom R Markdown formats and templates for authoring journal articles and conference submissions.

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articlejournalpaperrmarkdown

11.80 score 1.5k stars 3 dependents 179 scripts 11k downloads

git2rdata - Store and Retrieve Data.frames in a Git Repository

The git2rdata package is an R package for writing and reading dataframes as plain text files. A metadata file stores important information. 1) Storing metadata allows to maintain the classes of variables. By default, git2rdata optimizes the data for file storage. The optimization is most effective on data containing factors. The optimization makes the data less human readable. The user can turn this off when they prefer a human readable format over smaller files. Details on the implementation are available in vignette("plain_text", package = "git2rdata"). 2) Storing metadata also allows smaller row based diffs between two consecutive commits. This is a useful feature when storing data as plain text files under version control. Details on this part of the implementation are available in vignette("version_control", package = "git2rdata"). Although we envisioned git2rdata with a git workflow in mind, you can use it in combination with other version control systems like subversion or mercurial. 3) git2rdata is a useful tool in a reproducible and traceable workflow. vignette("workflow", package = "git2rdata") gives a toy example. 4) vignette("efficiency", package = "git2rdata") provides some insight into the efficiency of file storage, git repository size and speed for writing and reading.

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reproducible-researchversion-control

10.30 score 104 stars 4 dependents 249 scripts 790 downloads

git2rdata - Store and Retrieve Data.frames in a Git Repository

The git2rdata package is an R package for writing and reading dataframes as plain text files. A metadata file stores important information. 1) Storing metadata allows to maintain the classes of variables. By default, git2rdata optimizes the data for file storage. The optimization is most effective on data containing factors. The optimization makes the data less human readable. The user can turn this off when they prefer a human readable format over smaller files. Details on the implementation are available in vignette("plain_text", package = "git2rdata"). 2) Storing metadata also allows smaller row based diffs between two consecutive commits. This is a useful feature when storing data as plain text files under version control. Details on this part of the implementation are available in vignette("version_control", package = "git2rdata"). Although we envisioned git2rdata with a git workflow in mind, you can use it in combination with other version control systems like subversion or mercurial. 3) git2rdata is a useful tool in a reproducible and traceable workflow. vignette("workflow", package = "git2rdata") gives a toy example. 4) vignette("efficiency", package = "git2rdata") provides some insight into the efficiency of file storage, git repository size and speed for writing and reading.

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reproducible-researchversion-control

10.29 score 104 stars 4 dependents 244 scripts 736 downloads

checklist - A Thorough and Strict Set of Checks for R Packages and Source Code

An opinionated set of rules for R packages and R source code projects.

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checklistcontinuous-integrationcontinuous-testingquality-assurance

7.77 score 21 stars 3 dependents 26 scripts

checklist - A Thorough and Strict Set of Checks for R Packages and Source Code

An opinionated set of rules for R packages and R source code projects.

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checklistcontinuous-integrationcontinuous-testingquality-assurance

7.77 score 21 stars 3 dependents 26 scripts

qrcode - Generate QRcodes with R

Create static QR codes in R. The content of the QR code is exactly what the user defines. We don't add a redirect URL, making it impossible for us to track the usage of the QR code. This allows to generate fast, free to use and privacy friendly QR codes.

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qrcodeqrcode-generatorr-project

7.70 score 51 stars 7 dependents 548 scripts 1.7k downloads

effectclass - Classification and Visualisation of Effects

Classify effects by comparing the confidence intervals with thresholds.

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effect-sizefan-chart

5.70 score 5 stars 2 dependents 56 scripts

effectclass - Classification and Visualisation of Effects

Classify effects by comparing the confidence intervals with thresholds.

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effect-sizefan-chart

5.66 score 5 stars 2 dependents 51 scripts

INBOtheme - Themes for ggplot2

Several themes for the ggplot2 package. Among others themes complying with the style guide for the Research Institute for Nature and Forest (INBO) and Elsevier journals.

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ggplot2ggplot2-themes

5.46 score 4 stars 482 scripts

INBOtheme - Themes for ggplot2

Several themes for the ggplot2 package. Among others themes complying with the style guide for the Research Institute for Nature and Forest (INBO) and Elsevier journals.

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ggplot2ggplot2-themes

5.46 score 4 stars 482 scripts

INBOmd - Markdown Templates for INBO

Several templates to generate reports, presentations and posters.

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bookdownrmarkdownxelatex

5.00 score 12 stars 28 scripts

INBOmd - Markdown Templates for INBO

Several templates to generate reports, presentations and posters.

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bookdownrmarkdownxelatex

5.00 score 12 stars 28 scripts

inlatools - Diagnostic Tools for INLA Models

Several functions which can be useful to choose sensible priors and diagnose the fitted model.

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bayesian-statisticsgplv3inlamixed-modelsmodel-checkingmodel-validation

4.73 score 4 stars 89 scripts

inlatools - Diagnostic Tools for INLA Models

Several functions which can be useful to choose sensible priors and diagnose the fitted model.

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bayesian-statisticsgplv3inlamixed-modelsmodel-checkingmodel-validation

4.70 score 4 stars 83 scripts

citeme - Manage Person and Organisation Information

Manage person and organisation information with validation and formatting capabilities. Provides R6 classes for managing organisations and their members, with support for multiple languages, ORCID identifiers, ROR identifiers, licensing requirements, publisher information, and integration with citation management systems.

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quarto

3.65 score 5 scripts

multimput - Using Multiple Imputation to Address Missing Data

Accompanying package for the paper: Working with population totals in the presence of missing data comparing imputation methods in terms of bias and precision. Published in 2017 in the Journal of Ornithology volume 158 page 603–615 (<doi:10.1007/s10336-016-1404-9>).

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imputationimputation-model

3.32 score 1 stars 1 dependents 14 scripts

multimput - Using Multiple Imputation to Address Missing Data

Accompanying package for the paper: Working with population totals in the presence of missing data comparing imputation methods in terms of bias and precision. Published in 2017 in the Journal of Ornithology volume 158 page 603–615 (<doi:10.1007/s10336-016-1404-9>).

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imputationimputation-model

3.32 score 1 stars 1 dependents 14 scripts

n2kanalysis - Generic Functions to Analyse Data from the 'Natura 2000' Monitoring

All generic functions and classes for the analysis for the 'Natura 2000' monitoring. The classes contain all required data and definitions to fit the model without the need to access other sources. Potentially they might need access to one or more parent objects. An aggregation object might for example need the result of an imputation object. The actual definition of the analysis, using these generic function and classes, is defined in dedictated analysis R packages for every monitoring scheme. For example 'abvanalysis' and 'watervogelanalysis'.

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analysismonitoringnatura2000

3.18 score 1 stars 8 scripts

grtsdb - Create a Sampling Frame Using GRTS

Create an SQLite database containing the sampling framework for different levels of resolution. Take a sample from this framework.

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grtssamplingsampling-methodssqlite

2.81 score 1 stars 13 scripts

grtsdb - Create a Sampling Frame Using GRTS

Create an SQLite database containing the sampling framework for different levels of resolution. Take a sample from this framework.

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grtssamplingsampling-methodssqlite

2.81 score 1 stars 13 scripts

flandersqmd - Auxiliary Function for the Flandersqmd Quarto Extensions

Prepare new documents using the Flandersqmd extensions.

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corporate-identityquarto

2.30 score 1 stars 5 scripts

n2khelper - Auxiliary Functions for the Analysis and Reporting of the Natura 2000 Monitoring

Auxiliary functions for analysing Natura 2000 monitoring data.

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natura2000

2.18 score 1 dependents 1 scripts

designpower - Design Power Analysis Tools

Tools for iterative power analysis and design optimization using simulation and adaptive sampling strategies.

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2.00 score 2 scripts

territoria - Clustering Observations from Breeding Birds into Territoria

Clusters individual observations based on breeding indication and distance between observations.

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birdbreedingclusterhome-rangeterritory

1.70 score 4 scripts

territoria - Clustering Observations from Breeding Birds into Territoria

Clusters individual observations based on breeding indication and distance between observations.

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birdbreedingclusterhome-rangeterritory

1.70 score 4 scripts

ladybird - Analysis of Ladybird Occurrence Data

Analysis of ladybird occurrence data from Belgium, the Netherlands and the UK since 1990.

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1.70 score 3 scripts

ladybird - Analysis of Ladybird Occurrence Data

Analysis of ladybird occurrence data from Belgium, the Netherlands and the UK since 1990.

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1.70 score 3 scripts

n2kupdate - Auxiliary Functions to Update the n2kresult Database

The functions are useful to store the results from https:// github.com/inbo/n2kanalysis into a PostgreSQL database created with https:// github.com/inbo/n2kresult.

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etlnatura2000

1.70 score 1 scripts

lipsum - Generate dummy text

Functions that generate dummy text. This is useful when developping a corporate identity for documents.

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lipsumtypography

1.51 score 32 scripts